If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ), 'gf_id' => 'HOM05D000949', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000949' ), 'data_identifier' => 'HOM05D000949', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000949', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05440' => 'bna', 'A03p61600' => 'bna', 'A04p20050' => 'bna', 'A05p41480' => 'bna', 'A06p44350' => 'bna', 'A06p44530' => 'bna', 'A08p30600' => 'bna', 'A09p60150' => 'bna', 'Aa31LG4G4050' => 'aar', 'Aa31LG5G17110' => 'aar', 'Aa31LG7G3030' => 'aar', 'Aa31sc996G10' => 'aar', 'Actinidia01217' => 'ach', 'Actinidia01218' => 'ach', 'Actinidia02649' => 'ach', 'Actinidia04577' => 'ach', 'Actinidia04611' => 'ach', 'Actinidia08304' => 'ach', 'Actinidia09008' => 'ach', 'Actinidia16021' => 'ach', 'Actinidia18470' => 'ach', 'Actinidia18471' => 'ach', 'Actinidia18472' => 'ach', 'Actinidia21719' => 'ach', 'Actinidia24542' => 'ach', 'Actinidia27702' => 'ach', 'Actinidia30290' => 'ach', 'Actinidia31565' => 'ach', 'Actinidia33633' => 'ach', 'Actinidia39133' => 'ach', 'Ah.01g005750' => 'amhyb', 'Ah.04g150780' => 'amhyb', 'Ah.07g201600' => 'amhyb', 'Ah.07g201620' => 'amhyb', 'AL1G30340' => 'aly', 'AL3G17600' => 'aly', 'AL4G17690' => 'aly', 'AL7G18870' => 'aly', 'Aqoxy3G00180' => 'aox', 'Aqoxy3G00181' => 'aox', 'Aqoxy3G00182' => 'aox', 'Aqoxy7G01392' => 'aox', 'arahy.Tifrunner.gnm1.ann1.12YBNC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IKD0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594W3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7IYA67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8H6BM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIB83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKPY8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJG3MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0X5TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P782D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UB29AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UM9WQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y407WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZJI2X' => 'arhy', 'AT1G17980' => 'ath', 'AT2G25850' => 'ath', 'AT3G06560' => 'ath', 'AT4G32850' => 'ath', 'AT5G02670' => 'ath', 'ATR0705G203' => 'atr', 'ATR0807G011' => 'atr', 'Atru.chr1.3543' => 'acertr', 'Atru.chr4.3058' => 'acertr', 'Atru.chr7.2051' => 'acertr', 'Atru.chr9.927' => 'acertr', 'AUR62005731' => 'cqu', 'AUR62009223' => 'cqu', 'AUR62016239' => 'cqu', 'AUR62018376' => 'cqu', 'AUR62022222' => 'cqu', 'AUR62028830' => 'cqu', 'AUR62030286' => 'cqu', 'AUR62031935' => 'cqu', 'AUR62032782' => 'cqu', 'AUR62040222' => 'cqu', 'AUR62042618' => 'cqu', 'AUR62043622' => 'cqu', 'BcaB03g12767' => 'bca', 'BcaB07g31837' => 'bca', 'BcaC06g31295' => 'bca', 'BcaC06g31321' => 'bca', 'BcaC06g32471' => 'bca', 'BcaC06g34155' => 'bca', 'BcaC06g34156' => 'bca', 'BcaC06g34200' => 'bca', 'BcaC06g34205' => 'bca', 'BcaC09g52082' => 'bca', 'BcaNung06386' => 'bca', 'BolC1t00597H' => 'bol', 'BolC2t08579H' => 'bol', 'BolC4t26249H' => 'bol', 'BolC4t27099H' => 'bol', 'BolC5t34727H' => 'bol', 'BolC7t43708H' => 'bol', 'BolC7t43751H' => 'bol', 'BolC8t49465H' => 'bol', 'BolC8t49885H' => 'bol', 'BolC8t51905H' => 'bol', 'BraA01t00517Z' => 'bra', 'BraA04t17587Z' => 'bra', 'BraA05t22868Z' => 'bra', 'BraA06t27310Z' => 'bra', 'BraA06t27327Z' => 'bra', 'BraA08t34991Z' => 'bra', 'BraA09t41384Z' => 'bra', 'C01p06040' => 'bna', 'C02p24870' => 'bna', 'C04p55730' => 'bna', 'C05p60670' => 'bna', 'C07p31690' => 'bna', 'C07p32100' => 'bna', 'C07p59360' => 'bna', 'C08p18310' => 'bna', 'C08p22510' => 'bna', 'C08p43590' => 'bna', 'CAN.G1124.1' => 'can', 'CAN.G126.30' => 'can', 'CAN.G1489.23' => 'can', 'CAN.G20.13' => 'can', 'CAN.G20.14' => 'can', 'CAN.G208.70' => 'can', 'CAN.G484.70' => 'can', 'CANSAT21G2389' => 'cansat', 'CANSAT64G0299' => 'cansat', 'CARHR018590' => 'chi', 'CARHR081110' => 'chi', 'CARHR115380' => 'chi', 'CARHR240850' => 'chi', 'Carub.0001s1768' => 'cru', 'Carub.0003s0603' => 'cru', 'Carub.0004s0568' => 'cru', 'Carub.0007s0764' => 'cru', 'Ca_15568_v3' => 'car', 'Ca_17170_v3' => 'car', 'Ca_17234_v3' => 'car', 'Ca_23267_v3' => 'car', 'Ca_23276_v3' => 'car', 'Ca_25464_v3' => 'car', 'CBR_g4832' => 'cbr', 'CBR_g4834' => 'cbr', 'Cc03_g00580' => 'ccan', 'Cc04_g02490' => 'ccan', 'Cc04_g06780' => 'ccan', 'Cc11_g09350' => 'ccan', 'CDE02G4498' => 'cde', 'CDE05G0018' => 'cde', 'CDE05G2226' => 'cde', 'CDE09G0228' => 'cde', 'Cfa003639' => 'cfa', 'Cfa015282' => 'cfa', 'Cfa019119' => 'cfa', 'Cfa019120' => 'cfa', 'Cfa019124' => 'cfa', 'Cfa019126' => 'cfa', 'Cfa019128' => 'cfa', 'Cfa019721' => 'cfa', 'Cfa022705' => 'cfa', 'Ciclev10004938m.g' => 'ccl', 'Ciclev10007557m.g' => 'ccl', 'Ciclev10007847m.g' => 'ccl', 'Ciclev10011139m.g' => 'ccl', 'Ciclev10017803m.g' => 'ccl', 'Ciclev10025039m.g' => 'ccl', 'CiPaw.01G135500' => 'cil', 'CiPaw.01G135700' => 'cil', 'CiPaw.01G230900' => 'cil', 'CiPaw.07G202000' => 'cil', 'CiPaw.08G027300' => 'cil', 'CiPaw.15G137900' => 'cil', 'CiPaw.15G138000' => 'cil', 'CiPaw.16G089500' => 'cil', 'ClCG04G010850' => 'cla', 'ClCG08G012080' => 'cla', 'ClCG09G000240' => 'cla', 'COL.COLO4_04946' => 'col', 'COL.COLO4_21002' => 'col', 'COL.COLO4_30523' => 'col', 'COL.COLO4_34576' => 'col', 'Cpa.g.sc25.22' => 'cpa', 'Cpa.g.sc3.454' => 'cpa', 'Cpa.g.sc513.3' => 'cpa', 'Cpa.g.sc513.4' => 'cpa', 'Cpa.g.sc9.23' => 'cpa', 'Cre10.g433750' => 'cre', 'CsaV3_1G006980' => 'csa', 'CsaV3_2G030670' => 'csa', 'CsaV3_2G030680' => 'csa', 'CsaV3_7G035250' => 'csa', 'CSS0001132' => 'camsi', 'CSS0005904' => 'camsi', 'CSS0006323' => 'camsi', 'CSS0009884' => 'camsi', 'CSS0010054' => 'camsi', 'CSS0028856' => 'camsi', 'CSS0032086' => 'camsi', 'CSS0032383' => 'camsi', 'CSS0033827' => 'camsi', 'CSS0034717' => 'camsi', 'CSS0035057' => 'camsi', 'CSS0040355' => 'camsi', 'CSS0041760' => 'camsi', 'CSS0041990' => 'camsi', 'CSS0042580' => 'camsi', 'CSS0045428' => 'camsi', 'CSS0047224' => 'camsi', 'CSS0047765' => 'camsi', 'CSS0049439' => 'camsi', 'DCAR_002062' => 'dca', 'DCAR_002063' => 'dca', 'DCAR_007587' => 'dca', 'DCAR_007589' => 'dca', 'DCAR_015155' => 'dca', 'DCAR_021652' => 'dca', 'DCAR_025627' => 'dca', 'DCAR_026355' => 'dca', 'Dinv04916' => 'din', 'Dinv04917' => 'din', 'Dinv17525' => 'din', 'Dinv27934' => 'din', 'Dinv30431' => 'din', 'Dinv37971' => 'din', 'Dinv44261' => 'din', 'Duzib084G0139' => 'dzi', 'Duzib168G0685' => 'dzi', 'Duzib187G0163' => 'dzi', 'Duzib187G1119' => 'dzi', 'Duzib205G0274' => 'dzi', 'Duzib235G0254' => 'dzi', 'ECA232G0141' => 'eca', 'ECA233G4930' => 'eca', 'ECA240G3595' => 'eca', 'ECA246G5275' => 'eca', 'EL10Ac2g03972' => 'bvu', 'EL10Ac3g05543' => 'bvu', 'EL10Ac3g05918' => 'bvu', 'EL10Ac3g07265' => 'bvu', 'EL10Ac9g21197' => 'bvu', 'Eucgr.J02933' => 'egr', 'Eucgr.K02240' => 'egr', 'FAN02G3570' => 'fan', 'FAN04G1080' => 'fan', 'FAN05G3873' => 'fan', 'FAN06G2654' => 'fan', 'FAN08G0431' => 'fan', 'FAN09G2749' => 'fan', 'FAN13G3110' => 'fan', 'FAN14G3312' => 'fan', 'FAN15G1074' => 'fan', 'FAN15G1396' => 'fan', 'FAN15G2895' => 'fan', 'FAN18G1133' => 'fan', 'FAN19G2508' => 'fan', 'FAN20G1860' => 'fan', 'FAN23G0610' => 'fan', 'FAN23G1025' => 'fan', 'FAN24G0354' => 'fan', 'FAN24G3256' => 'fan', 'FAN24G3586' => 'fan', 'FAN26G1420' => 'fan', 'FAN27G1565' => 'fan', 'FAN27G1756' => 'fan', 'FAN28G1642' => 'fan', 'FvH4_1g24260' => 'fve', 'FvH4_2g09631' => 'fve', 'FvH4_2g09640' => 'fve', 'FvH4_2g35240' => 'fve', 'FvH4_5g16820' => 'fve', 'FvH4_6g32471' => 'fve', 'FvH4_6g32480' => 'fve', 'FvH4_7g04310' => 'fve', 'Glyma.04G086800' => 'gma', 'Glyma.05G242502' => 'gma', 'Glyma.06G088500' => 'gma', 'Glyma.07G015000' => 'gma', 'Glyma.07G099400' => 'gma', 'Glyma.08G050033' => 'gma', 'Glyma.08G200500' => 'gma', 'Glyma.09G033600' => 'gma', 'Glyma.09G179500' => 'gma', 'Gohir.A02G055700' => 'ghi', 'Gohir.A05G045100' => 'ghi', 'Gohir.A06G091300' => 'ghi', 'Gohir.A07G022233' => 'ghi', 'Gohir.A09G081000' => 'ghi', 'Gohir.A09G176100' => 'ghi', 'Gohir.D02G060800' => 'ghi', 'Gohir.D02G060900' => 'ghi', 'Gohir.D05G046800' => 'ghi', 'Gohir.D06G090600' => 'ghi', 'Gohir.D07G024600' => 'ghi', 'Gohir.D07G024800' => 'ghi', 'Gohir.D09G081100' => 'ghi', 'Gohir.D09G171800' => 'ghi', 'Gorai.001G025700' => 'gra', 'Gorai.001G025900' => 'gra', 'Gorai.005G068400' => 'gra', 'Gorai.005G068500' => 'gra', 'Gorai.006G096700' => 'gra', 'Gorai.006G193600' => 'gra', 'Gorai.009G048100' => 'gra', 'Gorai.010G104200' => 'gra', 'GSVIVG01008352001' => 'vvi', 'GSVIVG01011814001' => 'vvi', 'GSVIVG01015292001' => 'vvi', 'GSVIVG01016969001' => 'vvi', 'GSVIVG01034960001' => 'vvi', 'HanXRQChr02g0053851' => 'han', 'HanXRQChr03g0061611' => 'han', 'HanXRQChr03g0077961' => 'han', 'HanXRQChr09g0250471' => 'han', 'HanXRQChr09g0275671' => 'han', 'HanXRQChr13g0394751' => 'han', 'HanXRQChr13g0409651' => 'han', 'HanXRQChr14g0438051' => 'han', 'HanXRQChr17g0556831' => 'han', 'Haze_01335' => 'cav', 'Haze_01340' => 'cav', 'Haze_07468' => 'cav', 'Haze_15855' => 'cav', 'Haze_16313' => 'cav', 'Haze_16314' => 'cav', 'Haze_18763' => 'cav', 'Haze_21924' => 'cav', 'Haze_26982' => 'cav', 'Hma1.2p1_0013F.1_g008290' => 'hma', 'Hma1.2p1_0154F.1_g068030' => 'hma', 'Hma1.2p1_0430F.1_g151330' => 'hma', 'Hma1.2p1_1612F.1_g293590' => 'hma', 'Hma1.2p1_1612F.1_g293600' => 'hma', 'HPP92_003040' => 'vpl', 'HPP92_006384' => 'vpl', 'HPP92_009805' => 'vpl', 'Hund00700' => 'sun', 'Hund02346' => 'sun', 'Hund03142' => 'sun', 'Hund03513' => 'sun', 'Hund03514' => 'sun', 'Hund03517' => 'sun', 'Hund03520' => 'sun', 'Hund07949' => 'sun', 'Hund11989' => 'sun', 'Hund13357' => 'sun', 'Hund14817' => 'sun', 'Hund16205' => 'sun', 'Hund19493' => 'sun', 'Hund25020' => 'sun', 'Lalb_Chr01g0013191' => 'lal', 'Lalb_Chr08g0242901' => 'lal', 'Lalb_Chr09g0330641' => 'lal', 'Lalb_Chr14g0370881' => 'lal', 'Lalb_Chr14g0372991' => 'lal', 'Lalb_Chr15g0089121' => 'lal', 'Lalb_Chr16g0387271' => 'lal', 'Lalb_Chr18g0058591' => 'lal', 'Lalb_Chr20g0120731' => 'lal', 'Lalb_Chr23g0269731' => 'lal', 'Lalb_Chr25g0280191' => 'lal', 'Lj1g0014753' => 'lja', 'Lj2g0027473' => 'lja', 'Lj3g0003693' => 'lja', 'Lj4g0008763' => 'lja', 'Lj4g0018329' => 'lja', 'Lj4g0024044' => 'lja', 'Lj6C694G3' => 'lonja', 'Lj6g0003299' => 'lja', 'Lj9A423G69' => 'lonja', 'Lj9A514T52' => 'lonja', 'Lj9C514T7' => 'lonja', 'Lsat_1_v5_gn_1_36841' => 'lsa', 'Lsat_1_v5_gn_3_109100' => 'lsa', 'Lsat_1_v5_gn_4_98440' => 'lsa', 'Lsat_1_v5_gn_6_341' => 'lsa', 'Lsat_1_v5_gn_8_380' => 'lsa', 'Manes.01G015800' => 'mes', 'Manes.03G207200' => 'mes', 'Manes.04G134800' => 'mes', 'Manes.05G137200' => 'mes', 'Manes.11G032900' => 'mes', 'Mapoly0003s0033' => 'mpo', 'MBI01_g10121_MAGBIO' => 'mbi', 'MBI04_g22937_MAGBIO' => 'mbi', 'MBI10_g36209_MAGBIO' => 'mbi', 'MBI10_g36213_MAGBIO' => 'mbi', 'MBI19_g03269_MAGBIO' => 'mbi', 'MCO03G011' => 'mco', 'MD06G1222200' => 'mdo', 'MD08G1110400' => 'mdo', 'MD09G1202000' => 'mdo', 'MD09G1202100' => 'mdo', 'MD09G1233900' => 'mdo', 'MD14G1231300' => 'mdo', 'MD17G1182800' => 'mdo', 'MD17G1263100' => 'mdo', 'Medtr0283s0030' => 'mtr', 'Medtr3g110375' => 'mtr', 'Medtr6g082000' => 'mtr', 'Medtr8g014560' => 'mtr', 'Medtr8g106560' => 'mtr', 'MELO3C002115.2' => 'cme', 'MELO3C011126.2' => 'cme', 'MELO3C024435.2' => 'cme', 'Migut.D00987' => 'egut', 'Migut.E00384' => 'egut', 'Migut.I00957' => 'egut', 'Migut.L00956' => 'egut', 'Migut.L01010' => 'egut', 'Migut.L01011' => 'egut', 'MSTRG.10165' => 'ama', 'MSTRG.11022' => 'ama', 'MSTRG.13561' => 'ama', 'MSTRG.2206' => 'ama', 'MSTRG.22634' => 'ama', 'Nitab4.5_0000300g0210' => 'nta', 'Nitab4.5_0000318g0150' => 'nta', 'Nitab4.5_0000350g0040' => 'nta', 'Nitab4.5_0001991g0020' => 'nta', 'Nitab4.5_0002150g0020' => 'nta', 'Nitab4.5_0002294g0110' => 'nta', 'Nitab4.5_0003886g0060' => 'nta', 'Nitab4.5_0005618g0020' => 'nta', 'Nn1g09252' => 'nnu', 'Nn1g09253' => 'nnu', 'Nn2g15634' => 'nnu', 'Nn3g21776' => 'nnu', 'Nn3g21781' => 'nnu', 'Nn6g35338' => 'nnu', 'Nn7g36030' => 'nnu', 'Nn7g36031' => 'nnu', 'Nn8g39051' => 'nnu', 'Oeu002528.1' => 'oeu', 'Oeu002530.1' => 'oeu', 'Oeu002531.3' => 'oeu', 'Oeu017130.1' => 'oeu', 'Oeu024261.1' => 'oeu', 'Oeu048381.2' => 'oeu', 'Oeu057771.2' => 'oeu', 'Os01g0702900' => 'osa', 'Os02g0227400' => 'osa', 'Os02g0771500' => 'osa', 'Os03g0313300' => 'osa', 'Os04g0588350' => 'osa', 'Os06g0319600' => 'osa', 'Os06g0558700' => 'osa', 'Os06g0558766' => 'osa', 'Os07g0688500' => 'osa', 'Peaxi162Scf00205g01218' => 'pax', 'Peaxi162Scf00207g01241' => 'pax', 'Peaxi162Scf00228g00621' => 'pax', 'Peaxi162Scf00699g00521' => 'pax', 'Peaxi162Scf01160g00149' => 'pax', 'PGR044G1346' => 'pgr', 'PGR102G0512' => 'pgr', 'PGSC0003DMG400004615' => 'stu', 'PGSC0003DMG400016522' => 'stu', 'PGSC0003DMG400029059' => 'stu', 'PGSC0003DMG400029391' => 'stu', 'PGSC0003DMG400030520' => 'stu', 'Phvul.002G325900' => 'pvu', 'Phvul.004G153014' => 'pvu', 'Phvul.006G119900' => 'pvu', 'Phvul.009G112300' => 'pvu', 'Phvul.009G204900' => 'pvu', 'Phvul.010G144800' => 'pvu', 'Potri.006G235400' => 'ptr', 'Potri.008G102500' => 'ptr', 'Potri.015G043200' => 'ptr', 'Potri.018G057200' => 'ptr', 'Pp3c18_13990' => 'ppa', 'Pp3c21_9790' => 'ppa', 'PRCOL_00003586' => 'pco', 'Prupe.1G444600' => 'ppe', 'Prupe.3G057600' => 'ppe', 'Prupe.3G057700' => 'ppe', 'Prupe.5G226600' => 'ppe', 'Psat1g034160' => 'psa', 'Psat4g197160' => 'psa', 'Psat5g018400' => 'psa', 'Psat7g005800' => 'psa', 'PSO063G2920' => 'pso', 'PSO170G2901' => 'pso', 'PSO170G4059' => 'pso', 'PSO210G1054' => 'pso', 'PSO210G1779' => 'pso', 'PSO357G0461' => 'pso', 'PSO423G0266' => 'pso', 'PSO832G2251' => 'pso', 'QL03p053169' => 'qlo', 'QL03p053233' => 'qlo', 'QL05p019739' => 'qlo', 'QL06p012857' => 'qlo', 'QL10p026981' => 'qlo', 'QL11p025867' => 'qlo', 'QL12p040925' => 'qlo', 'QL93p2010_0057' => 'qlo', 'RcHm_v2.0_Chr2g0120741' => 'rch', 'RcHm_v2.0_Chr2g0140721' => 'rch', 'RcHm_v2.0_Chr2g0140741' => 'rch', 'RcHm_v2.0_Chr2g0140761' => 'rch', 'RcHm_v2.0_Chr6g0306691' => 'rch', 'RcHm_v2.0_Chr7g0179251' => 'rch', 'Rhsim01G0213100' => 'rsi', 'Rhsim02G0094100' => 'rsi', 'Rhsim04G0241500' => 'rsi', 'Rhsim11G0049600' => 'rsi', 'Rhsim12G0087600' => 'rsi', 'Rhsim12G0203400' => 'rsi', 'Sabra06G0183700' => 'sbr', 'Sabra06G0184200' => 'sbr', 'Sabra15G0042100' => 'sbr', 'Sabra15G0046900' => 'sbr', 'Sabra15G0047000' => 'sbr', 'Sabra18G0052100' => 'sbr', 'SalBow2G0647' => 'sbo', 'SalBow2G2248' => 'sbo', 'SalBow8G0853' => 'sbo', 'Sc04g0003320' => 'sci', 'Sc13g0007150' => 'sci', 'Sc15g0001830' => 'sci', 'Sc23g0005430' => 'sci', 'Sed0002516' => 'sed', 'Sed0008221' => 'sed', 'Sed0010067' => 'sed', 'Sed0013768' => 'sed', 'Sed0016849' => 'sed', 'Sed0026372' => 'sed', 'SEGI_08176' => 'sgi', 'SEGI_11415' => 'sgi', 'SEGI_13614' => 'sgi', 'SEGI_18716' => 'sgi', 'SEGI_19640' => 'sgi', 'SEGI_24846' => 'sgi', 'SEGI_36137' => 'sgi', 'SEGI_39115' => 'sgi', 'SEGI_39470' => 'sgi', 'SEGI_41440' => 'sgi', 'SGA_v2.0_scaffold115G32078' => 'sas', 'SGA_v2.0_scaffold124G33563' => 'sas', 'SGA_v2.0_scaffold157G37337' => 'sas', 'SGA_v2.0_scaffold170G38814' => 'sas', 'SGA_v2.0_scaffold265G46066' => 'sas', 'SGA_v2.0_scaffold42G16096' => 'sas', 'SHI11108' => 'shi', 'SMO119G0323' => 'smo', 'SMO134G0130' => 'smo', 'Solyc01g058260.4' => 'sly', 'Solyc05g008630.4' => 'sly', 'Solyc06g066460.3' => 'sly', 'Solyc06g066470.4' => 'sly', 'Solyc08g066200.3' => 'sly', 'Solyc12g095890.2' => 'sly', 'Solyc12g099180.3' => 'sly', 'Sopen01g023750' => 'spe', 'Sopen05g004470' => 'spe', 'Sopen06g024740' => 'spe', 'Sopen08g019880' => 'spe', 'Sopen12g031790' => 'spe', 'Sopen12g033860' => 'spe', 'Sp1g16040' => 'spa', 'Sp2g12720' => 'spa', 'Sp2g21980' => 'spa', 'Sp3g05500' => 'spa', 'Sp4g05670' => 'spa', 'Sp7g30620' => 'spa', 'TAR362G0920' => 'tar', 'TAR365G1047' => 'tar', 'TAR374G1726' => 'tar', 'TAR383G0050' => 'tar', 'TAR383G0944' => 'tar', 'TAR383G0988' => 'tar', 'TAR622G0089' => 'tar', 'TAR624G1138' => 'tar', 'TAR624G1232' => 'tar', 'TAR626G1067' => 'tar', 'THA.LOC104803745' => 'tha', 'THA.LOC104803802' => 'tha', 'THA.LOC104812155' => 'tha', 'THA.LOC104818875' => 'tha', 'Thecc.03G044600' => 'tca', 'Thecc.04G159000' => 'tca', 'Thecc.04G305100' => 'tca', 'Thecc.05G178100' => 'tca', 'Thecc.06G100800' => 'tca', 'Thecc.09G048200' => 'tca', 'Thecc.09G213000' => 'tca', 'Thhalv10001908m.g' => 'esa', 'Thhalv10006945m.g' => 'esa', 'Thhalv10024486m.g' => 'esa', 'TPR.G12503' => 'tpr', 'TPR.G12777' => 'tpr', 'TPR.G34663' => 'tpr', 'TPR.G35426' => 'tpr', 'TPR.G38547' => 'tpr', 'TWI09G0276' => 'twi', 'TWI12G0162' => 'twi', 'TWI15G0984' => 'twi', 'TWI34G0264' => 'twi', 'TWI60G0356' => 'twi', 'TWI75G0564' => 'twi', 'unitig_27.g25181' => 'ugi', 'unitig_29.g31869' => 'ugi', 'unitig_32.g11587' => 'ugi', 'unitig_699.g19482' => 'ugi', 'unitig_748.g7443' => 'ugi', 'vmacro00183' => 'vma', 'vmacro01418' => 'vma', 'vmacro07950' => 'vma', 'vmacro17010' => 'vma', 'VMungo0251G0706' => 'vmu', 'VMungo0331G0180' => 'vmu', 'VMungo0464G1336' => 'vmu', 'VMungo0540G1062' => 'vmu', 'VMungo1309G1610' => 'vmu', 'VMungo1309G3120' => 'vmu', 'Zm00001eb015030' => 'zma', 'Zm00001eb034770' => 'zma', 'Zm00001eb052460' => 'zma', 'Zm00001eb072530' => 'zma', 'Zm00001eb104080' => 'zma', 'Zm00001eb126480' => 'zma', 'Zm00001eb161150' => 'zma', 'Zm00001eb161240' => 'zma', 'Zm00001eb176100' => 'zma', 'Zm00001eb205010' => 'zma', 'Zm00001eb217900' => 'zma', 'Zm00001eb237990' => 'zma', 'Zm00001eb277450' => 'zma', 'Zm00001eb291230' => 'zma', 'Zm00001eb331120' => 'zma', 'Zm00001eb355230' => 'zma', 'Zm00001eb384370' => 'zma', 'Zm00001eb395840' => 'zma' ) $gf_id = 'HOM05D000949' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000949' ) $data_identifier = 'HOM05D000949' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 11, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 2, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 9, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 11, 'lja' => (int) 7, 'lonja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 10, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395840' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1